FastQCFastQC Report
Sat 11 May 2024
EGAF00005094001

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005094001
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences15349514
Total Bases2.3 Gbp
Sequences flagged as poor quality0
Sequence length150
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GATCGGAAGAGCGTCGTGTAGGGAAAGATTACTCGCGTGTAGATCTCGGT325270.21190898943119632Illumina Single End PCR Primer 1 (96% over 30bp)
AGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAG165370.10773631008773309No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)