EGAF00005094013 FastQC Report

Summary

Basic Statistics
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Adapter Content
Kmer Content

Basic Statistics

Measure	Value
Filename	EGAF00005094013
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	16240445
Sequences flagged as poor quality	0
Sequence length	150
%GC	50

Per base sequence quality

Per base quality graph

Per tile sequence quality

Per base quality graph

Per sequence quality scores

Per Sequence quality graph

Per base sequence content

Per base sequence content

Per sequence GC content

Per sequence GC content graph

Per base N content

N content graph

Sequence Length Distribution

Sequence length distribution

Sequence Duplication Levels

Duplication level graph

Overrepresented sequences

No overrepresented sequences

Adapter Content

Adapter graph

Kmer Content

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
AGTGAGT	4015	0.0	13.829034	1
TAACCCC	4370	0.0	12.849999	9
GTCACAT	6760	0.0	11.023443	1
GTGAGTA	5530	0.0	10.805817	2
CTCAAGT	9200	0.0	8.607852	7
ATAACCC	8870	0.0	7.0613146	8
CACATCA	12260	0.0	6.870283	3
TCACATC	11535	0.0	6.865619	2
AAGATCC	12970	0.0	6.438844	9
CAAGTAA	12495	0.0	6.280297	9
GGCTAGA	2745	0.0	5.8225126	80-84
ACCTTCC	14390	0.0	5.787724	1
TGGCTAG	2790	0.0	5.780249	75-79
GAGTATA	12510	0.0	5.4669557	4
GTATAAC	12380	0.0	5.233607	6
CCTCAAG	15335	0.0	5.1640224	6
TAGCATA	10355	0.0	5.144836	8
CCTTCCT	15565	0.0	5.1342673	2
TCAAGTA	15655	0.0	5.0126038	8