FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005094268

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005094268
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences15301217
Sequences flagged as poor quality0
Sequence length150
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GGGGGGT11854.1638923E-68.5883091
GGGGTAA36200.08.4340991
GGGGTGA63850.07.8557231
GGGGTCA50750.07.30521
GGGGTGG65700.07.30258371
GGGGGGC30655.456968E-126.87805271
GGGGTGC73350.06.7391761
GGGGTCC38150.06.47861771
GGGGTAC38750.06.3783041
GGGGGAC40100.06.3448551
GGGGGCC66150.06.2638741
GGGGTGT58900.06.17095951
GGATCCC42800.05.94459441
GGGGTAG39301.4551915E-115.91909651
GGGGGCA59750.05.83984471
GGGGCCT61500.05.7918721
GGGTCCC29001.532535E-75.76537851
GGGGTCG93400.05.75947431
GGGGGAG56850.05.6262651
CCCCCTC59100.05.5350691
Produced by FastQC (version 0.11.5)