FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005094275

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005094275
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences14474376
Sequences flagged as poor quality0
Sequence length150
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CTAGTCC27050.08.5160718
CCTAGTC30250.08.3291237
CTCCCTA51400.06.72263056
CTCCTAG36151.2732926E-116.1732595
TAGTCCC37202.7284841E-115.9989529
CCCTACT46301.0913936E-115.44181358
GATCGGA162850.05.092685140-144
Produced by FastQC (version 0.11.5)