EGAF00005095136 FastQC Report

Summary

Basic Statistics
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Adapter Content
Kmer Content

Basic Statistics

Measure	Value
Filename	EGAF00005095136
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	17999424
Sequences flagged as poor quality	0
Sequence length	150
%GC	43

Per base sequence quality

Per base quality graph

Per tile sequence quality

Per base quality graph

Per sequence quality scores

Per Sequence quality graph

Per base sequence content

Per base sequence content

Per sequence GC content

Per sequence GC content graph

Per base N content

N content graph

Sequence Length Distribution

Sequence length distribution

Sequence Duplication Levels

Duplication level graph

Overrepresented sequences

No overrepresented sequences

Adapter Content

Adapter graph

Kmer Content

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TAGGAGG	6725	0.0	10.384064	7
AGTGAGT	6695	0.0	9.578988	1
TGAGTAG	7225	0.0	9.565694	3
GAGTAGG	7335	0.0	9.324093	4
GTGAGTA	7325	0.0	9.140257	2
GGAGGGG	8040	0.0	8.77539	9
AGGAGGG	8265	0.0	8.536328	8
CTAGATC	2300	0.0	6.2603173	140-144
AGATCGG	28910	0.0	6.0961766	140-144
GTCTCTT	8955	0.0	6.0221786	1
GATCGGA	28145	0.0	6.0214267	140-144
TAGATCG	9075	0.0	5.8546906	140-144
GTCGTGT	15460	0.0	5.4484196	140-144
GTAGGAG	14175	0.0	5.332786	6
TGTAGGG	12180	0.0	5.1424036	140-144
TCGTGTA	15890	0.0	5.1288114	140-144
AGCGTCG	18395	0.0	5.1113734	140-144
GCGTCGT	17980	0.0	5.0531693	140-144
AGAGCGT	22035	0.0	5.011947	140-144