FastQCFastQC Report
Sun 15 May 2022
EGAF00005099524

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005099524
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences21363900
Sequences flagged as poor quality0
Sequence length100
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GCCAGAACACAGGTGTCGTGAAAACTACCCCTAAAAGCCAAAATGGGAAA307380.14387822448148513No Hit
AGAAGACCTGGGACAGAGGACTGCTGTCTGCCCTCTCTGGTCACCCTGCC235660.11030757492779876No Hit
GTTTGCCGCCAGAACACAGGTGTCGTGAAAACTACCCCTAAAAGCCAAAA216570.10137194051647873No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)