FastQCFastQC Report
Sat 4 Jun 2022
EGAF00005099824

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005099824
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences45749746
Sequences flagged as poor quality0
Sequence length30-100
%GC45

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AGTCGGAGGCCAAGCGGTCTTAGGAAGACAAGTCTCATGGTCAACTCCTT9888112.1613475187381366No Hit
AAGTCGGAGGCCAAGCGGTCTTAGGAAGACAAGTCTCATGGTCAACTCCT4563800.9975574509200554No Hit
CGGAGGCCAAGCGGTCTTAGGAAGACAAGTC2876460.6287379169274514No Hit
AGGCCAAGCGGTCTTAGGAAGACAAGTCTCA784660.1715113347295961No Hit
GTCGGAGGCCAAGCGGTCTTAGGAAGACAAG498920.10905415737171523No Hit
AGTCGGAGGGCCAAGCGGTCTTAGGAAGACAAGTCTCATGGTCAACTCCT457610.10002459904367557No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)