FastQCFastQC Report
Sat 4 Jun 2022
EGAF00005099854

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005099854
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences42097354
Sequences flagged as poor quality0
Sequence length30-100
%GC45

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AGTCGGAGGCCAAGCGGTCTTAGGAAGACAAAACCTAGATACAACTCCTT7083131.6825594311699494No Hit
AAGTCGGAGGCCAAGCGGTCTTAGGAAGACAAAACCTAGATACAACTCCT2231720.5301330815233661No Hit
CGGAGGCCAAGCGGTCTTAGGAAGACAAAAC2000940.47531253389464806No Hit
CGGAGGCCAAGCGGTCTTAGGAAGACAAAAA1123630.2669122624666624No Hit
AGTCGGAGGGCCAAGCGGTCTTAGGAAGACAAAACCTAGATACAACTCCT685840.1629176028498133No Hit
CGGAGGCCAAGCGGTCTTAGGAAGACAAAACCTAG630420.149752879955353No Hit
CGGAGGCCAAGCGGTCTTAGGAAGACAAAACCT497710.11822833330569897No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)