FastQCFastQC Report
Fri 1 Jul 2022
EGAF00005099855

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005099855
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences44068545
Sequences flagged as poor quality0
Sequence length30-100
%GC44

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AGTCGGAGGCCAAGCGGTCTTAGGAAGACAATTGCCATCTCCAACTCCTT6359451.443081454130151No Hit
AAGTCGGAGGCCAAGCGGTCTTAGGAAGACAATTGCCATCTCCAACTCCT3758850.8529553222145183No Hit
CGGAGGCCAAGCGGTCTTAGGAAGACAATTG3148820.7145277884713461No Hit
CGGAGGCCAAGCGGTCTTAGGGAGACAATTG866470.19661869934666554No Hit
CGGAGGCCAAGCGGTCTTAGGAAGACAATTGCCATCTCCA778150.17657719355154566No Hit
CGGAGGCCAAGCGGTCTTAGGAAGACAATTGCCA692560.1571551772358266No Hit
CGGAGGCCAAGCGGTCTTAGGAAGACAATTGCCATCTC456410.1035682026715427No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)