FastQCFastQC Report
Tue 28 Jun 2022
EGAF00005099872

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005099872
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences54370118
Sequences flagged as poor quality0
Sequence length30-100
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AGTCGGAGGCCAAGCGGTCTTAGGAAGACAAGCCGGTTATCCAACTCCTT19556363.596894897303699No Hit
AAGTCGGAGGCCAAGCGGTCTTAGGAAGACAAGCCGGTTATCCAACTCCT14538662.6740166353878427No Hit
CGGAGGCCAAGCGGTCTTAGGAAGACAAGCC4600400.846126543260399No Hit
AGTCGGAGGGCCAAGCGGTCTTAGGAAGACAAGCCGGTTATCCAACTCCT2205740.40568975774523797No Hit
AAGTCGGAGGGCCAAGCGGTCTTAGGAAGACAAGCCGGTTATCCAACTCC1015800.18683056748193924No Hit
CAACTCCTTGGCTCACAGAACGACATGGCTA891430.16395587002404519No Hit
CGGAGGCCAAGCGGTCTTAGGAAGACAAGCCGGTTA857740.15775945161641916No Hit
GTCGGAGGCCAAGCGGTCTTAGGAAGACAAG825360.1518039743816631No Hit
CGGAGGCCAAGCGGTCTTAGGAAGACAAGCCGGT656520.12075015176535023No Hit
CGGAGGCCAAGCGGTCTTAGGAAGACAAGGC644380.1185173076137153No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)