FastQCFastQC Report
Sat 4 Jun 2022
EGAF00005099878

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005099878
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences44310044
Sequences flagged as poor quality0
Sequence length30-100
%GC45

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AGTCGGAGGCCAAGCGGTCTTAGGAAGACAAGAAGGCCTGCCAACTCCTT8657591.9538662611122661No Hit
AAGTCGGAGGCCAAGCGGTCTTAGGAAGACAAGAAGGCCTGCCAACTCCT8435261.903690278438902No Hit
CGGAGGCCAAGCGGTCTTAGGAAGACAAGAA1105770.2495529004665398No Hit
AGTCGGAGGGCCAAGCGGTCTTAGGAAGACAAGAAGGCCTGCCAACTCCT859840.1940508115947707No Hit
AAGTCGGAGGGCCAAGCGGTCTTAGGAAGACAAGAAGGCCTGCCAACTCC639590.14434424845075758No Hit
CGGAGGCCAAGCGGTCTTAGGAAGACAAGGA579830.13085746428055905No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)