EGAF00005100995 FastQC Report

Summary

Basic Statistics
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Adapter Content
Kmer Content

Basic Statistics

Measure	Value
Filename	EGAF00005100995
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	28968564
Sequences flagged as poor quality	0
Sequence length	151
%GC	42

Per base sequence quality

Per base quality graph

Per tile sequence quality

Per base quality graph

Per sequence quality scores

Per Sequence quality graph

Per base sequence content

Per base sequence content

Per sequence GC content

Per sequence GC content graph

Per base N content

N content graph

Sequence Length Distribution

Sequence length distribution

Sequence Duplication Levels

Duplication level graph

Overrepresented sequences

No overrepresented sequences

Adapter Content

Adapter graph

Kmer Content

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
AGCGTCG	10950	0.0	14.561158	9
GAGCGTC	13965	0.0	11.469782	8
AGAGCGT	16135	0.0	10.423663	7
ATCGGAA	16230	0.0	10.167825	1
CGCCGTA	3610	0.0	9.438972	55-59
TCGGAAG	17230	0.0	9.384139	2
CGGAAGA	19170	0.0	8.660609	3
AAGAGCG	19500	0.0	8.364794	6
TCGCCGT	4745	0.0	7.4256434	55-59
GCCGTAT	5260	0.0	6.919138	55-59
GTCGCCG	5530	0.0	6.502653	55-59
CGTATCA	6370	0.0	5.9187956	60-64
CCGTATC	6110	0.0	5.837917	55-59
CGCTACG	5770	0.0	5.6784673	30-34
TGGTCGC	6485	0.0	5.63335	50-54
GTGGTCG	7200	0.0	5.235004	50-54
GGTCGCC	6895	0.0	5.1932454	50-54
GTTACGC	6950	0.0	5.027253	30-34