FastQCFastQC Report
Wed 20 Apr 2022
EGAF00005101019

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005101019
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences58701204
Sequences flagged as poor quality0
Sequence length151
%GC42

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
AGCGTCG240150.028.2226269
GAGCGTC301400.022.679898
AGAGCGT322400.021.1801177
ATCGGAA348300.019.7538261
TCGGAAG365100.018.8406772
CGGAAGA389950.017.8088423
AAGAGCG393550.017.7377626
GTCGATC33600.013.80765153
CGCCGTA111550.013.47818655-59
TCTCGGT227150.013.3393918
TATCGGT47950.012.5476388
CTCGGTG256350.012.5267619
TCGCCGT132000.011.55484355-59
GCCGTAT135850.011.2380555-59
ATATCGG52350.010.9391337
GTAGATC361000.010.4618783
GATGTCG63200.010.322816
GTGTCGA64650.09.9313251
GTGTAGA505500.09.7714831
GATATCG55050.09.6125366
Produced by FastQC (version 0.11.5)