FastQCFastQC Report
Thu 16 Jun 2022
EGAF00005102338

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005102338
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences68114520
Sequences flagged as poor quality0
Sequence length30-150
%GC52

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CCCTCCTTAGGCAACCTGGTGGTCCCCCGCTCCCGGGAGGTCACCATATT2206530.32394414582969977No Hit
CCCCTCCTTAGGCAACCTGGTGGTCCCCCGCTCCCGGGAGGTCACCATAT2137010.31373780509647575No Hit
GCTCCGTTTCCGACCTGGGCCGGTTCACCCCTCCTTAGGCAACCTGGTGG1312670.1927151508958736No Hit
CTCCGTTTCCGACCTGGGCCGGTTCACCCCTCCTTAGGCAACCTGGTGGT1144140.16797299606603702No Hit
CCTCCTTAGGCAACCTGGTGGTCCCCCGCTCCCGGGAGGTCACCATATTG1075560.1579046582138434No Hit
CTCCTTAGGCAACCTGGTGGTCCCCCGCTCCCGGGAGGTCACCATATTGA956550.14043261260594658No Hit
GTGGCTATTCACAGGCGCGATCCCACTACTGATCAGCACGGGAGTTTTGA909220.13348402073449242No Hit
CACCCCTCCTTAGGCAACCTGGTGGTCCCCCGCTCCCGGGAGGTCACCAT713860.10480291133226807No Hit
GTCTCTCTCAGCCGGGCGCGCCCCCCTCTCCCCCCCGCCACCCGACGCGT685570.10064961185955652No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)