FastQCFastQC Report
Tue 28 Jun 2022
EGAF00005102348

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005102348
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences93446564
Sequences flagged as poor quality0
Sequence length30-150
%GC46

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CCCTCCTTAGGCAACCTGGTGGTCCCCCGCTCCCGGGAGGTCACCATATT1929300.20646023967237576No Hit
CCCCTCCTTAGGCAACCTGGTGGTCCCCCGCTCCCGGGAGGTCACCATAT1907140.2040888309173144No Hit
GTCTGGAGTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAAATGGACC1847940.19775365951390142No Hit
GCTCCGTTTCCGACCTGGGCCGGTTCACCCCTCCTTAGGCAACCTGGTGG1263470.13520775359915854No Hit
CCTCCTTAGGCAACCTGGTGGTCCCCCGCTCCCGGGAGGTCACCATATTG995980.10658283808059545No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)