FastQCFastQC Report
Tue 28 Jun 2022
EGAF00005102490

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005102490
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences79309996
Sequences flagged as poor quality0
Sequence length30-150
%GC44

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTCTGGAGTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAAATGGACC1853620.23371833230202158No Hit
CCCTCCTTAGGCAACCTGGTGGTCCCCCGCTCCCGGGAGGTCACCATATT1587840.2002067936051844No Hit
CCCCTCCTTAGGCAACCTGGTGGTCCCCCGCTCCCGGGAGGTCACCATAT1445940.1823149757818674No Hit
GCTCCGTTTCCGACCTGGGCCGGTTCACCCCTCCTTAGGCAACCTGGTGG802660.101205401649497No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)