FastQCFastQC Report
Sat 25 May 2024
EGAF00005103728

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005103728
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences114805883
Total Bases16.3 Gbp
Sequences flagged as poor quality0
Sequence length35-151
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CCCGTATCGAAGGCCTTTTTGGACAGGTGGTGTGTGGTGGCCTTGGTATG2078210.1810194691852159No Hit
GTCGTTACCTAGAAGGTTGCCTGGCTGGCCCAGCTCGGCTCGAATAAGGA1877370.16352559215105728No Hit
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN1797190.15654162949123435No Hit
CTCCGATTATGATGGGTATTACTATGAAGAAGATTATTACAAATGCATGG1466470.1277347433493456No Hit
GCCCTCTTGAACTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTTACGGTA1412590.12304160406135284No Hit
GTTGGTTAGTAGGCCTAGTATGAGGAGCGTTATGGAGTGGAAGTGAAATC1316780.11469621291097078No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)