FastQCFastQC Report
Tue 28 Jun 2022
EGAF00005103793

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005103793
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences105705776
Sequences flagged as poor quality0
Sequence length35-151
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGAGCTCTCGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG5159320.48808307315202903No Hit
CGAGATCTCGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG2421600.2290887112923706No Hit
CGAGCTCTCGCGCAAAATTAACCCCCTAATAAAATTAATTAACCACTCAT2102250.19887749558737453No Hit
CGAGCTCTCGGTTGACTATTCTCTACAAACCACAAAGACATTGGAACACT1767410.16720089165231614No Hit
CGAGCTCTCGCTAAATACTACCGTATGGCCCACCATAATTACCCCCATAC1644230.15554779144708233No Hit
CGAGCTCTCGCTATTCTCTACAAACCACAAAGACATTGGAACACTATACC1437070.13594999766143337No Hit
CGAGCTCTCGCACATGCCTATCATATAGTAAAACCCAGCCCATGACCCCT1401470.1325821589919552No Hit
CGAGCTCTCGGTGTGAGGCCGGTAGCGGCCCCCGGCGCGCCGGGCCCGGG1372180.129811260266421No Hit
CGAGCTCTCGATCACATGCCTATCATATAGTAAAACCCAGCCCATGACCC1238140.11713078006257673No Hit
CGAGCTCTCGCCGTCATCTACTCTACCATCTTTGCAGGCACACTCATCAC1085010.10264434367332964No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)