FastQCFastQC Report
Tue 28 Jun 2022
EGAF00005103847

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005103847
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences64393972
Sequences flagged as poor quality0
Sequence length35-151
%GC48

[WARN]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CCGTCATCTACTCTACCATCTTTGCAGGCACACTCATCACAGCGCTAAGC1339570.20802723584126787No Hit
CGCAAAATTAACCCCCTAATAAAATTAATTAACCACTCACTCATCGACCT1306830.20294290900396703No Hit
CACATGCCTATCATATAGTAAAACCCAGCCCATGACCCCTAACAGGGGCC1234390.1916934088178316No Hit
GTTGACTATTCTCTACAAACCACAAAGACATTGGAACACTATACCTATTA1193460.18533722380101045No Hit
CTATTCTCTACAAACCACAAAGACATTGGAACACTATACCTATTATTCGG1106350.17180956006254747No Hit
ATCACATGCCTATCATATAGTAAAACCCAGCCCATGACCCCTAACAGGGG1001910.15559065062798114No Hit
CTAAATACTACCGTATGGCCCACCATAATTACCCCCATACTCCTTACACT912900.14176792821539258No Hit
GTGTGAGGCCGGTAGCGGCCCCCGGCGCGCCGGGCCCGGGTCTTCCCGGA907160.14087654043145528No Hit
CGGTGTGAGGCCGGTAGCGGCCCCCGGCGCGCCGGGCCCGGGTCTTCCCG896460.13921489421401123No Hit
CTAGCATTTACCATCTCACTTCTAGGAATACTAGTATATCGCTCACACCT891320.138416682853482No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG794400.12336558459229692No Hit
ATTCTCTACAAACCACAAAGACATTGGAACACTATACCTATTATTCGGCG745180.11572201199205416No Hit
GGTGTGAGGCCGGTAGCGGCCCCCGGCGCGCCGGGCCCGGGTCTTCCCGG675980.10497566449232236No Hit
CCAAAATGAACGAAAATCTGTTCGCTTCATTCATTGCCCCCACAATCCTA668390.10379698273621014No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)