EGAF00005104405 FastQC Report

Basic Statistics

Measure	Value
Filename	EGAF00005104405
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	10757834
Sequences flagged as poor quality	0
Sequence length	75
%GC	50

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GATCGGAAGAGCACACGTCTGAACTCCAGTCACTAGCTTATCTCGTATGCCGTCTTCTGCTTGAAAAAAAAAAGG	33169	0.3083241477791905	TruSeq Adapter, Index 10 (100% over 63bp)

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
TCGTATG	4910	56.771557	43
TATGCCG	4955	56.739647	46
CGTATGC	5240	53.657356	44
TATCTCG	5625	49.55503	39
CTCGTAT	5695	48.886036	42
GTATGCC	5830	48.640514	45
ATGCCGT	6905	40.915787	47
TCTCGTA	6885	40.586163	41
GCCGTCT	6780	40.29489	49
TAGCTTA	7125	40.286133	34
GCTTATC	7120	39.972263	36
ACTAGCT	7470	38.472786	32
TGCCGTC	7420	37.749805	48
AGCTTAT	7895	36.52876	35
ATCTCGT	7740	36.148216	40
CACTAGC	8285	34.730484	31
TTATCTC	8285	34.269222	38
CTAGCTT	8475	33.991154	33
CTTATCT	8445	33.537315	37
TCACTAG	8875	32.49939	30