EGAF00005104598 FastQC Report

Basic Statistics

Measure	Value
Filename	EGAF00005104598
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	42899451
Sequences flagged as poor quality	0
Sequence length	51
%GC	48

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
ATCGGAAGAGCACACGTCTGAACTCCAGTCACATTACTCGATCTCGTATGC	516783	1.2046377936165198	TruSeq Adapter, Index 27 (97% over 38bp)

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
CGTATGC	57480	42.9227	45
TCGTATG	57830	42.674587	44
TTACTCG	58080	42.44134	34
ACACGTC	59500	41.896667	12
CTCGTAT	59120	41.646584	43
ACGTCTG	59910	41.55679	14
ATCGGAA	60445	41.41141	1
ATCTCGT	56940	40.779133	41
TCGGAAG	62320	40.521713	2
CACACGT	61690	40.445797	11
CACGTCT	61720	40.415207	13
CGTCTGA	61535	40.400875	15
TCTCGTA	57930	40.09814	42
ATTACTC	61890	40.08311	33
CGGAAGA	62935	40.02426	3
ACATTAC	62150	39.833378	31
TACTCGA	62015	39.722942	35
CTCGATC	58660	39.548218	37
GATCTCG	58850	39.435596	40
GCACACG	63450	39.377083	10