EGAF00005104602 FastQC Report

Basic Statistics

Measure	Value
Filename	EGAF00005104602
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	45177660
Sequences flagged as poor quality	0
Sequence length	51
%GC	48

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
ATCGGAAGAGCACACGTCTGAACTCCAGTCACATTACTCGATCTCGTATGC	1221448	2.703654859503569	TruSeq Adapter, Index 27 (97% over 38bp)

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
CGTATGC	136015	43.628235	45
ACACGTC	140335	42.68917	12
TCGTATG	138885	42.68618	44
TTACTCG	138955	42.586853	34
ACGTCTG	140455	42.540207	14
ATCGGAA	141540	42.53899	1
CTCGTAT	140015	42.239624	43
CGTCTGA	141585	42.154613	15
CACACGT	142445	42.093155	11
TCGGAAG	143635	42.093056	2
CACGTCT	142270	42.051636	13
CGGAAGA	143780	41.951004	3
ATCTCGT	133375	41.748074	41
GCACACG	144085	41.643707	10
TCTCGTA	133905	41.58465	42
ATTACTC	142610	41.58066	33
TACTCGA	142655	41.44129	35
ACATTAC	143355	41.440716	31
CTCGATC	134735	41.271023	37
GATCTCG	135390	41.109116	40