FastQCFastQC Report
Wed 1 May 2024
EGAF00005104613

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005104613
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences42840498
Total Bases2.1 Gbp
Sequences flagged as poor quality0
Sequence length51
%GC49

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTGCCTCTATGTGTAGATCTC8244111.9243730546736406Illumina Single End Sequencing Primer (100% over 31bp)
CGCAAAACTAACCCCCTAATAAAATTAATTAACCACTCATTCATCGACCT572840.1337145987425263No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)