EGAF00005104642 FastQC Report

Basic Statistics

Measure	Value
Filename	EGAF00005104642
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	52913747
Sequences flagged as poor quality	0
Sequence length	51
%GC	48

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
ATCGGAAGAGCACACGTCTGAACTCCAGTCACTCCGCGAAATCTCGTATGC	447944	0.8465550549652059	TruSeq Adapter, Index 6 (97% over 35bp)
CCCGTATCGAAGGCCTTTTTGGACAGGTGGTGTGTGGTGGCCTTGGTATGT	84132	0.15899837900347522	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
CGCGAAA	53060	43.41641	35
CCGCGAA	53410	43.19437	34
TCGTATG	53270	42.865604	44
CGTATGC	53860	42.45029	45
CTCCGCG	54125	42.408115	32
TCCGCGA	54595	42.236187	33
ACTCCGC	54460	42.16377	31
CGAAATC	49855	42.038246	37
ACGTCTG	55195	42.033344	14
CTCGTAT	54085	42.015213	43
ACACGTC	55950	41.553555	12
AATCTCG	50455	41.39107	40
CACTCCG	55515	41.366585	30
TCTCGTA	50595	41.07247	42
CACACGT	57960	40.143562	11
CACGTCT	57910	40.109375	13
CGGAAGA	59450	39.56658	3
CGTCTGA	58830	39.413242	15
GCACACG	60125	38.78677	10
ATCGGAA	60340	38.512745	1