FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005104743

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005104743
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences20733620
Sequences flagged as poor quality0
Sequence length8
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TGTCGGAT1985646195.76938807598479No Hit
NGTCGGAT3560791.7173990841927267No Hit
TGTCGGCT598110.2884735034210138No Hit
TGTCGGGT540100.2604947905864967No Hit
TNTCGGAT459690.22171236860712215No Hit
TGGCGGAT432780.20873344837997418No Hit
TGTCGGAG390240.18821604717362428No Hit
TGCCGGAT371140.17900395589385742No Hit
TGTCGGAA252580.12182146677714746No Hit
TGTCGGTT216740.10453553214537549No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)