FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005104744

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005104744
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences17290124
Sequences flagged as poor quality0
Sequence length8
%GC37

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CATGCTTA1658054595.89604447024209No Hit
NATGCTTA2963391.7139206173420156No Hit
CATGCTAA390590.22590352735469105No Hit
CATGCGTA337130.19498414239250106No Hit
CAGGCTTA295050.17064654944059396No Hit
CATGCTTC258500.14950731411758528No Hit
CCTGCTTA238930.1381887139733642No Hit
CGTGCTTA224230.12968675065603924No Hit
CATGCTGA209370.12109224896247128No Hit
CACGCTTA188480.10901020721424554No Hit
TATGCTTA188260.10888296694691142No Hit
CATGCTTG176180.10189631954056547No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)