FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005104754

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005104754
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences16114335
Sequences flagged as poor quality0
Sequence length8
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TTCGCTGA1552427296.33827272425452No Hit
NTCGCTGA2325581.4431746640491214No Hit
TTCGCTGC390920.24259145661300946No Hit
TTCGCTGG314740.1953167785080799No Hit
TTCGCTAA309270.19192228534407407No Hit
GTCGCTGA273520.16973706950984946No Hit
TTCGCGGA231800.1438470777726788No Hit
TTCGCTGT210480.13061662178426847No Hit
TTCGCTTA193670.1201849161010988No Hit
TTCTCTGA179080.11113086577882363No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)