FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005104755

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005104755
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences15988857
Sequences flagged as poor quality0
Sequence length8
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TTCGCTGA1527857095.55761240468908No Hit
NTCGCTGA2244011.403483688671429No Hit
GTCGCTGA401970.25140633880207947No Hit
TTCGCTGC391960.24514572867841647No Hit
TTCGCGGA391360.24477046733234276No Hit
TTCGCTAA376170.2352701009209101No Hit
TTCGCTGG335470.20981487294557702No Hit
TTCGCTTA276350.1728391216457812No Hit
TGCGCTGA244110.15267507865008736No Hit
TTCGGTGA243180.15209342356367314No Hit
TTGGCTGA221060.13825878860508914No Hit
TTCTCTGA216840.13561945047103743No Hit
TTCGCTGT215230.1346124991924063No Hit
TTTGCTGA185840.1162309475905626No Hit
TTCGCCGA170610.10670556375605837No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)