FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005104760

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005104760
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences18472953
Sequences flagged as poor quality0
Sequence length8
%GC37

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AGGATCTA1766526495.62772124196928No Hit
NGGATCTA3136201.6977253176576588No Hit
AGGAGCTA446150.2415152574685812No Hit
ANGATCTA413320.22374332896316035No Hit
AGGGTCTA362740.1963627580279125No Hit
AGGCTCTA348720.18877328383826883No Hit
AGGATCTC331280.17933245431848388No Hit
AGGATGTA306360.16584246167897465No Hit
CGGATCTA292240.15819885429254327No Hit
AGGTTCTA254850.13795845201360063No Hit
AGGATCAA194630.10535944090801293No Hit
AGGATCTT191120.10345936570076261No Hit
GGGATCTA189100.1023658751256499No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)