FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005104763

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005104763
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences19442359
Sequences flagged as poor quality0
Sequence length151
%GC43

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TTTGCGC29600.078.06911
TGCGCGA30350.077.10981
TTACGCG13350.077.1044549
CGCCGAA31250.077.0085451
CGGTACG32100.072.9061
ACGACCG27300.070.35891
GCGCTAG34550.069.866181
GTGCGAC34700.068.92791
TCACGCG27250.068.09988
CGAACGC35450.068.092421
GGCGACT38500.067.668061
GACGCGT29600.067.626731
GTTACGC30800.066.8405468
CCGCTAT37200.066.076151
GCGCGTA30200.065.064711
ATAACGC34050.064.6242141
GTTCGCG39900.064.313598
TAGGCGC37550.064.284331
TTACCCG37750.063.74881
AACGCGT24950.062.480933
Produced by FastQC (version 0.11.5)