EGAF00005104774 FastQC Report

Summary

Basic Statistics
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Adapter Content
Kmer Content

Basic Statistics

Measure	Value
Filename	EGAF00005104774
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	17225429
Sequences flagged as poor quality	0
Sequence length	151
%GC	42

Per base sequence quality

Per base quality graph

Per tile sequence quality

Per base quality graph

Per sequence quality scores

Per Sequence quality graph

Per base sequence content

Per base sequence content

Per sequence GC content

Per sequence GC content graph

Per base N content

N content graph

Sequence Length Distribution

Sequence length distribution

Sequence Duplication Levels

Duplication level graph

Overrepresented sequences

No overrepresented sequences

Adapter Content

Adapter graph

Kmer Content

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGACGCT	2390	0.0	95.84787	6
ACGACGC	2455	0.0	94.78711	5
CACGACG	2590	0.0	89.285385	4
GACGCTC	3515	0.0	65.58338	7
TACACGA	3925	0.0	59.473133	2
CTACACG	4075	0.0	56.783787	1
ACGCTCT	4135	0.0	55.749844	8
ACACGAC	4430	0.0	52.855267	3
CGCTCTT	5365	0.0	43.373787	9
CGTCGCG	1335	0.009506769	5.978496	145
TCTTCCG	10070	0.0	5.600665	10-14
CGGCAAG	2160	2.6659368E-4	5.4413624	1
GTTCCGA	4835	5.456968E-12	5.397614	5
CTTCCGA	11680	0.0	5.3003497	10-14
AACGGGG	3115	2.9807961E-6	5.1880727	1
TAACCCT	45295	0.0	5.1854687	6
ACGGGGG	4945	6.184564E-11	5.1310515	2
CGTAGAG	2480	3.4444788E-4	5.0354543	1
CTAACCC	46435	0.0	5.0113573	5