FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005104785

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005104785
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences18628648
Sequences flagged as poor quality0
Sequence length8
%GC37

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AGCAATTC1784336495.78453573227644No Hit
NGCAATTC3165251.699130285783488No Hit
AGCACTTC448000.2404898090296193No Hit
ANCAATTC416830.22375751584333978No Hit
AGCAATTA409770.21996765412068553No Hit
AGCAGTTC312990.16801541367897446No Hit
AGCAATGC261820.14054696830387262No Hit
AGCAAGTC257320.1381313340613876No Hit
AGCAATTT237240.12735223726381004No Hit
CGCAATTC225130.12085149711347813No Hit
AGCATTTC224680.12060993368922962No Hit
AGCAATCC223230.11983156265554001No Hit
AGCCATTC202430.10866596437916483No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)