FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005104786

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005104786
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences20099962
Sequences flagged as poor quality0
Sequence length8
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CATAGCGA1928033895.92226094755802No Hit
NATAGCGA3410441.6967395261742286No Hit
CATAGCGC488280.2429258323970961No Hit
CNTAGCGA455490.22661236871990104No Hit
CATAGCGG367620.1828958681613428No Hit
CATAGCGT296140.1473336118744901No Hit
CATCGCGA268820.13374154637705285No Hit
CCTAGCGA244900.12184102636611949No Hit
CGTAGCGA238660.11873654288500646No Hit
CATAGCAA229450.1141544446700944No Hit
CAGAGCGA219120.10901513147139283No Hit
CATGGCGA206640.10280616450916674No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)