FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005104789

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005104789
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences22321325
Sequences flagged as poor quality0
Sequence length8
%GC62

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGTCCAGA2146226596.15139334246511No Hit
NGTCCAGA3807721.7058664752204449No Hit
GGGCCAGA475310.21293986804098772No Hit
GGTCCAGC471720.2113315405783483No Hit
GGTCCCGA314350.14082945344866402No Hit
GGCCCAGA312670.1400768099563982No Hit
GGTCCAGG308970.13841920226509852No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)