FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005104790

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005104790
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences19964240
Sequences flagged as poor quality0
Sequence length8
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CATAGCGA1916040095.97360079822724No Hit
NATAGCGA3396541.7013119457590171No Hit
CATAGCGC499190.25004207523051214No Hit
CATAGCGG350310.17546873810372945No Hit
CATAGCGT284560.1425348523159409No Hit
CAGAGCGA269980.13523179444847386No Hit
CATCGCGA262470.1314700684824466No Hit
CCTAGCGA234750.11758524241343522No Hit
CATAGCAA234010.11721457966844717No Hit
CGTAGCGA231460.11593729588504245No Hit
CATGGCGA203010.10168681602705637No Hit
CNTAGCGA200670.10051472031993203No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)