FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005104791

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005104791
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences18295486
Sequences flagged as poor quality0
Sequence length8
%GC37

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AGGATCTA1754435495.89444084732158No Hit
NGGATCTA2626591.4356492087720436No Hit
AGGAGCTA472690.2583642763029088No Hit
AGGGTCTA399140.21816310318293813No Hit
AGGCTCTA358040.1956985455319416No Hit
AGGATCTC342620.18727023704098378No Hit
AGGATGTA325960.17816416574011754No Hit
CGGATCTA324680.17746453961376046No Hit
AGGTTCTA264760.14471329157367013No Hit
GGGATCTA240690.13155704090068993No Hit
TGGATCTA197670.10804304406015779No Hit
AGGATCAA193990.1060316189468812No Hit
AGGATCTT189840.1037632998653329No Hit
AGGATCTG186760.1020798244987862No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)