FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005104792

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005104792
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences21714607
Sequences flagged as poor quality0
Sequence length8
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TTGAGCCT2084017895.97308392456746No Hit
NTGAGCCT3723131.7145739731785152No Hit
TTTAGCCT422630.19462935709589402No Hit
TTGAGCCG381710.1757848990773814No Hit
TTGCGCCT374170.17231258203291452No Hit
GTGAGCCT327310.15073263817300492No Hit
TGGAGCCT314600.14487943530361844No Hit
TTGGGCCT312710.14400905344499212No Hit
TTGAGCCC298640.13752954405299622No Hit
TTGAGGCT248820.11458646246740731No Hit
TTGAGCCA238270.10972798172216518No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)