FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005104793

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005104793
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences22453591
Sequences flagged as poor quality0
Sequence length8
%GC62

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGTCCAGA2158044296.1113168935873No Hit
NGTCCAGA3815501.6992827561524568No Hit
GNTCCAGA501060.22315361493847463No Hit
GGTCCAGC468110.20847890210523565No Hit
GGGCCAGA391650.1744264425231581No Hit
GGTCCCGA344540.1534453887576379No Hit
GGTCCAGG325180.14482315991237216No Hit
GGCCCAGA288940.12868320261111016No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)