FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005104796

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005104796
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences16233257
Sequences flagged as poor quality0
Sequence length8
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TTCGCTGA1558892396.0307780502705No Hit
NTCGCTGA2778801.7117944969392156No Hit
TTCGCTGC379150.2335637266138274No Hit
TNCGCTGA368470.2269846402357826No Hit
TTCGCTAA310350.19118159713728428No Hit
TTCGCTGG302060.18607479694309034No Hit
GTCGCTGA204590.12603139345357497No Hit
TTCGCTGT203250.12520592755970045No Hit
TTCGCGGA195730.12057346224482246No Hit
TTCGCTTA173440.10684239151761105No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)