FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005104812

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005104812
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences17225429
Sequences flagged as poor quality0
Sequence length8
%GC37

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CATGCTTA1656145896.14540224223153No Hit
NATGCTTA2496351.4492237029336104No Hit
CATGCTAA393610.2285051942683111No Hit
CATGCGTA340290.1975509579471141No Hit
CAGGCTTA255010.14804275701928818No Hit
CCTGCTTA254960.14801373016602373No Hit
CGTGCTTA254410.14769443478011493No Hit
CATGCTTC252820.14677138084630578No Hit
TATGCTTA212850.1235673143467138No Hit
CATGCTTG188510.10943704217758524No Hit
CATGCTGA182460.1059247929325882No Hit
AATGCTTA178690.10373616819644955No Hit
GATGCTTA178250.1034807318877225No Hit
CACGCTTA174620.1013733823407243No Hit
CATGCTTT174350.10121663733309633No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)