FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005104813

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005104813
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences18980845
Sequences flagged as poor quality0
Sequence length8
%GC37

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AACTTGAC1825629696.18273580549233No Hit
NACTTGAC3253361.714022742401616No Hit
CACTTGAC382240.20138197219354564No Hit
AACTTGCC353710.18635102915597276No Hit
AGCTTGAC289990.15278034249792358No Hit
GACTTGAC256560.13516784948193825No Hit
AACTTGGC250370.13190666695818862No Hit
TACTTGAC241660.12731783015982692No Hit
ACCTTGAC235770.12421470171638828No Hit
AACTTGAA208280.10973167949056009No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)