FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005104814

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005104814
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences20590710
Sequences flagged as poor quality0
Sequence length8
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TGTCGGAT1972482995.7947977510246No Hit
NGTCGGAT3544321.721319954484328No Hit
TGTCGGCT585720.2844583795313518No Hit
TGTCGGGT557050.2705346245952665No Hit
TGGCGGAT523740.25435742623736624No Hit
TGCCGGAT392770.1907510717211791No Hit
TGTCGGAG363950.17675446839861278No Hit
TGTCGGAA250750.12177821940088517No Hit
TGTCGGTT218540.10613524254384622No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)