FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005104817

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005104817
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences20518769
Sequences flagged as poor quality0
Sequence length8
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TGTCGGAT1970350296.0267255798825No Hit
NGTCGGAT2977831.451271272657731No Hit
TGTCGGCT609010.2968063045107628No Hit
TGTCGGGT576480.28095252692790684No Hit
TGGCGGAT465150.2266948860333678No Hit
TGTCGGAG400640.19525537813696328No Hit
TGCCGGAT366620.1786754361336199No Hit
TGTCGGAA254400.1239840460214743No Hit
GGTCGGAT240100.11701481701948105No Hit
TGTCGGTT225460.10987988606918865No Hit
TTTCGGAT223710.10902700839411955No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)