FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005104818

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005104818
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences21865965
Sequences flagged as poor quality0
Sequence length8
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TTGAGCCT2097176095.91051664081598No Hit
NTGAGCCT3749121.7145916038921676No Hit
TNGAGCCT490280.22422060951803408No Hit
TTGAGCCG406410.18586419579469737No Hit
TTGCGCCT380310.17392783716611637No Hit
TTGGGCCT323400.14790108737483115No Hit
TGGAGCCT322120.14731570273710765No Hit
TTTAGCCT312160.14276067852482158No Hit
GTGAGCCT305820.1398611952410973No Hit
TTGAGCCC297250.13594186215883908No Hit
TTGAGCCA238840.10922911474522162No Hit
TTGAGGCT233680.10686928292439873No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)