FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005104819

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005104819
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences19184472
Sequences flagged as poor quality0
Sequence length8
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CACATCCT1825714795.16627301496752No Hit
NACATCCT2653181.382983070891917No Hit
CACATCCA659330.34367899205148833No Hit
CACAGCCT577510.30102991627812326No Hit
CGCATCCT460070.23981374102972444No Hit
CACATGCT453510.23639430889732072No Hit
CCCATCCT433900.22617250034298572No Hit
CACATCGT321740.16770855095725334No Hit
CACATCCG319680.16663476586689485No Hit
CACGTCCT314510.16393987804303398No Hit
GACATCCT309200.16117201453342056No Hit
AACATCCT293620.15305086321896166No Hit
TACATCCT287530.14987642088872707No Hit
CACCTCCT275160.14342849779759378No Hit
CACATTCT219190.11425386114353317No Hit
CACATCCC214440.11177790037692983No Hit
CACATACT213820.11145472234002583No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)