FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005104821

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005104821
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences19442359
Sequences flagged as poor quality0
Sequence length8
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CACATCCT1863364295.8404378810205No Hit
NACATCCT3299521.6970780140414032No Hit
CACATCCA638450.32838093360995957No Hit
CCCATCCT373520.19211660478031498No Hit
CACAGCCT341010.1753953828339452No Hit
CGCATCCT288010.14813531629572316No Hit
CACATGCT282830.1454710305472705No Hit
CACATCCG243260.12511856200165833No Hit
CACCTCCT220700.11351503179218118No Hit
AACATCCT204630.10524957388144103No Hit
CACATCCC199180.10244641609590689No Hit
TACATCCT198020.10184978067733447No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)