FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005104822

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005104822
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences19920526
Sequences flagged as poor quality0
Sequence length8
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CATAGCGA1916580096.21131490202617No Hit
NATAGCGA2851181.4312774672716977No Hit
CATAGCGC502520.2522624151591178No Hit
CATAGCGG373210.1873494705912886No Hit
CATAGCGT298040.14961452323096286No Hit
CATCGCGA274790.13794314467399105No Hit
CGTAGCGA265390.1332243937735379No Hit
CCTAGCGA250940.1259705692510328No Hit
CATAGCAA231500.11621179079307443No Hit
CAGAGCGA229960.11543871883704275No Hit
CATGGCGA226840.11387249513391363No Hit
TATAGCGA208310.10457053192270123No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)