FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005104828

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005104828
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences18514992
Sequences flagged as poor quality0
Sequence length8
%GC37

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AGCAATTC1773858495.80659824211645No Hit
NGCAATTC3162331.7079834547052464No Hit
AGCACTTC438020.23657585161257427No Hit
AGCAATTA413690.2234351492023329No Hit
AGCAATGC335660.18129092359316168No Hit
AGCAAGTC306950.16578457068736513No Hit
AGCAGTTC306590.1655901336603332No Hit
AGCAATTT236970.12798817304376905No Hit
CGCAATTC235700.12730224242062863No Hit
AGCAATCC233360.1260384017449211No Hit
AGCATTTC205060.11075349100879979No Hit
AGCCATTC195620.10565492007774024No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)