FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005104837

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005104837
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences16233257
Sequences flagged as poor quality0
Sequence length151
%GC43

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGGTACG25150.078.081461
TTACGCG9400.077.883119
TGCGCGA24150.076.74641
TTTGCGC26400.076.055981
ACGACCG22750.075.326731
GTGCGAC25400.073.83821
CGCCGAA26350.070.896981
TTCCGCG15400.068.720657
TTACCCG33450.067.2821661
GACGCGT24350.067.05461
ATAACGC29150.066.105471
CCGCTAT30500.065.1086351
CGAACTA35700.065.1018751
TCGTACG29450.064.732978
CCTTACG32450.064.595881
TCCGCGA23400.064.432148
TAGGCGC30250.063.9447671
CGAACGT16850.063.6687433
ACGCCGA30200.063.5635571
GGCGACT33050.063.200641
Produced by FastQC (version 0.11.5)