FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005104841

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005104841
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences18299344
Sequences flagged as poor quality0
Sequence length8
%GC37

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AGCAATTC1741655095.17581613854573No Hit
NGCAATTC2536041.385863886705447No Hit
AGCAATGC553320.3023714948470284No Hit
AGCAAGTC527630.2883327402337483No Hit
AGCAGTTC525140.28697203571887603No Hit
AGCACTTC508270.27775312601369756No Hit
AGCAATTA436260.23840198861773404No Hit
GGCAATTC290800.15891280037142316No Hit
AGCATTTC290700.1588581536037576No Hit
AGCGATTC280990.15355195246343256No Hit
CGCAATTC278420.1521475305344279No Hit
AGCAATCC271630.14843701500993697No Hit
AGCCATTC258580.1413056118295825No Hit
AGCAATTT250050.136644242547711No Hit
AGCAACTC227970.12457823624715728No Hit
AGGAATTC199850.10921156517960426No Hit
AGCAATTG185280.10124953113073343No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)